PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc002996.1_g00004.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ERF
Protein Properties Length: 202aa    MW: 22720.6 Da    PI: 9.9198
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc002996.1_g00004.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.59.2e-20655255
                      AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
                             +++GVr+++ +g+Wv+eIr+p        +r++lg+f+taeeAa+a+++a+  + g
  Itr_sc002996.1_g00004.1  6 KFRGVRQRH-WGSWVSEIRHP-----LlkRRVWLGTFDTAEEAARAYDEAAILMSG 55
                             89******9.**********8.....334*********************987765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.9E-33563IPR001471AP2/ERF domain
CDDcd000184.90E-35665No hitNo description
PfamPF008479.2E-13653IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-21664IPR016177DNA-binding domain
SMARTSM003802.6E-41669IPR001471AP2/ERF domain
PROSITE profilePS5103222.023663IPR001471AP2/ERF domain
PRINTSPR003678.9E-11718IPR001471AP2/ERF domain
PRINTSPR003678.9E-112945IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MVQSRKFRGV RQRHWGSWVS EIRHPLLKRR VWLGTFDTAE EAARAYDEAA ILMSGRNAKT  60
NFPITPQDSQ ASQPNNNNIH RPADSSSIRS SLSEILHAKL RKCSKVPSPS LTCLRLDIES  120
SHIGVWQKRA GQPSDSKWVM TVELQKNNRG SSSDGGEGTK KAESVSVRGM DEEERLALQM  180
IDELLHINTP TPTPSFQDNI YI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3gcc_A8e-16264164ATERF1
2gcc_A8e-16264164ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016465991.15e-93PREDICTED: ethylene-responsive transcription factor WIN1-like
SwissprotQ9XI331e-74WIN1_ARATH; Ethylene-responsive transcription factor WIN1
TrEMBLM0ZT305e-88M0ZT30_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000074941e-87(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13522476
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G15360.11e-64ERF family protein